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query_params

CONFIG: ServerConfig = ServerConfig() module-attribute

This singleton loads the config from a hierarchy of sources (see customise_sources) and makes it importable in the server code.

BadRequest

Bases: OptimadeHTTPException

400 Bad Request

Source code in optimade/exceptions.py 
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class BadRequest(OptimadeHTTPException):
    """400 Bad Request"""

    status_code: int = 400
    title: str = "Bad Request"

BaseQueryParams

Bases: ABC

A base class for query parameters that provides validation via the check_params method.

Attributes:

Name Type Description
unsupported_params list[str]

Any string parameter listed here will raise a warning when passed to the check_params methods. Useful for disabling optional OPTIMADE query parameters that are not implemented by the server, e.g., cursor-based pagination.
Source code in optimade/server/query_params.py 
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class BaseQueryParams(ABC):
    """A base class for query parameters that provides validation via the `check_params` method.

    Attributes:
        unsupported_params: Any string parameter listed here will raise a warning when passed to
            the check_params methods. Useful for disabling optional OPTIMADE query parameters that
            are not implemented by the server, e.g., cursor-based pagination.

    """

    unsupported_params: list[str] = []

    def check_params(self, query_params: Iterable[str]) -> None:
        """This method checks whether all the query parameters that are specified
        in the URL string are implemented in the relevant `*QueryParams` class.

        This method handles four cases:

        * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
          and it is not prefixed with a known provider prefix, then a `BadRequest` is raised.
        * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
          that is prefixed with a known provider prefix, then the parameter is silently ignored
        * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
          that is prefixed with an unknown provider prefix, then a `UnknownProviderQueryParameter`
          warning is emitted.
        * If a query parameter is passed that is on the `unsupported_params` list for the inherited
          class, then a `QueryParamNotUsed` warning is emitted.

        Arguments:
            query_params: An iterable of the request's string query parameters.

        Raises:
            `BadRequest`: if the query parameter was not found in the relevant class, or if it
                does not have a valid prefix.

        """
        if not getattr(CONFIG, "validate_query_parameters", False):
            return
        errors = []
        warnings = []
        unsupported_warnings = []
        for param in query_params:
            if param in self.unsupported_params:
                unsupported_warnings.append(param)
            if not hasattr(self, param):
                split_param = param.split("_")
                if param.startswith("_") and len(split_param) > 2:
                    prefix = split_param[1]
                    if prefix in BaseResourceMapper.SUPPORTED_PREFIXES:
                        errors.append(param)
                    elif prefix not in BaseResourceMapper.KNOWN_PROVIDER_PREFIXES:
                        warnings.append(param)
                else:
                    errors.append(param)

        if warnings:
            warn(
                f"The query parameter(s) '{warnings}' are unrecognised and have been ignored.",
                UnknownProviderQueryParameter,
            )

        if unsupported_warnings:
            warn(
                f"The query parameter(s) '{unsupported_warnings}' are not supported by this server and have been ignored.",
                QueryParamNotUsed,
            )

        if errors:
            raise BadRequest(
                f"The query parameter(s) '{errors}' are not recognised by this endpoint."
            )

check_params(query_params)

This method checks whether all the query parameters that are specified in the URL string are implemented in the relevant *QueryParams class.

This method handles four cases:

  • If a query parameter is passed that is not defined in the relevant *QueryParams class, and it is not prefixed with a known provider prefix, then a BadRequest is raised.
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with a known provider prefix, then the parameter is silently ignored
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with an unknown provider prefix, then a UnknownProviderQueryParameter warning is emitted.
  • If a query parameter is passed that is on the unsupported_params list for the inherited class, then a QueryParamNotUsed warning is emitted.

Parameters:

Name Type Description Default
query_params Iterable[str]

An iterable of the request's string query parameters.

 required

Raises:

Type Description
`BadRequest`

if the query parameter was not found in the relevant class, or if it does not have a valid prefix.
Source code in optimade/server/query_params.py 
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def check_params(self, query_params: Iterable[str]) -> None:
    """This method checks whether all the query parameters that are specified
    in the URL string are implemented in the relevant `*QueryParams` class.

    This method handles four cases:

    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      and it is not prefixed with a known provider prefix, then a `BadRequest` is raised.
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with a known provider prefix, then the parameter is silently ignored
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with an unknown provider prefix, then a `UnknownProviderQueryParameter`
      warning is emitted.
    * If a query parameter is passed that is on the `unsupported_params` list for the inherited
      class, then a `QueryParamNotUsed` warning is emitted.

    Arguments:
        query_params: An iterable of the request's string query parameters.

    Raises:
        `BadRequest`: if the query parameter was not found in the relevant class, or if it
            does not have a valid prefix.

    """
    if not getattr(CONFIG, "validate_query_parameters", False):
        return
    errors = []
    warnings = []
    unsupported_warnings = []
    for param in query_params:
        if param in self.unsupported_params:
            unsupported_warnings.append(param)
        if not hasattr(self, param):
            split_param = param.split("_")
            if param.startswith("_") and len(split_param) > 2:
                prefix = split_param[1]
                if prefix in BaseResourceMapper.SUPPORTED_PREFIXES:
                    errors.append(param)
                elif prefix not in BaseResourceMapper.KNOWN_PROVIDER_PREFIXES:
                    warnings.append(param)
            else:
                errors.append(param)

    if warnings:
        warn(
            f"The query parameter(s) '{warnings}' are unrecognised and have been ignored.",
            UnknownProviderQueryParameter,
        )

    if unsupported_warnings:
        warn(
            f"The query parameter(s) '{unsupported_warnings}' are not supported by this server and have been ignored.",
            QueryParamNotUsed,
        )

    if errors:
        raise BadRequest(
            f"The query parameter(s) '{errors}' are not recognised by this endpoint."
        )

BaseResourceMapper

Generic Resource Mapper that defines and performs the mapping between objects in the database and the resource objects defined by the specification.

Attributes:

Name Type Description
ALIASES tuple[tuple[str, str], ...]

a tuple of aliases between OPTIMADE field names and the field names in the database , e.g. (("elements", "custom_elements_field")).
LENGTH_ALIASES tuple[tuple[str, str], ...]

a tuple of aliases between a field name and another field that defines its length, to be used when querying, e.g. (("elements", "nelements")). e.g. (("elements", "custom_elements_field")).
ENTRY_RESOURCE_CLASS type[EntryResource]

The entry type that this mapper corresponds to.
PROVIDER_FIELDS tuple[str, ...]

a tuple of extra field names that this mapper should support when querying with the database prefix.
TOP_LEVEL_NON_ATTRIBUTES_FIELDS set[str]

the set of top-level field names common to all endpoints.
SUPPORTED_PREFIXES set[str]

The set of prefixes registered by this mapper.
ALL_ATTRIBUTES set[str]

The set of attributes defined across the entry resource class and the server configuration.
ENTRY_RESOURCE_ATTRIBUTES dict[str, Any]

A dictionary of attributes and their definitions defined by the schema of the entry resource class.
ENDPOINT str

The expected endpoint name for this resource, as defined by the type in the schema of the entry resource class.
Source code in optimade/server/mappers/entries.py 
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class BaseResourceMapper:
    """Generic Resource Mapper that defines and performs the mapping
    between objects in the database and the resource objects defined by
    the specification.

    Attributes:
        ALIASES: a tuple of aliases between
            OPTIMADE field names and the field names in the database ,
            e.g. `(("elements", "custom_elements_field"))`.
        LENGTH_ALIASES: a tuple of aliases between
            a field name and another field that defines its length, to be used
            when querying, e.g. `(("elements", "nelements"))`.
            e.g. `(("elements", "custom_elements_field"))`.
        ENTRY_RESOURCE_CLASS: The entry type that this mapper corresponds to.
        PROVIDER_FIELDS: a tuple of extra field names that this
            mapper should support when querying with the database prefix.
        TOP_LEVEL_NON_ATTRIBUTES_FIELDS: the set of top-level
            field names common to all endpoints.
        SUPPORTED_PREFIXES: The set of prefixes registered by this mapper.
        ALL_ATTRIBUTES: The set of attributes defined across the entry
            resource class and the server configuration.
        ENTRY_RESOURCE_ATTRIBUTES: A dictionary of attributes and their definitions
            defined by the schema of the entry resource class.
        ENDPOINT: The expected endpoint name for this resource, as defined by
            the `type` in the schema of the entry resource class.

    """

    try:
        from optimade.server.data import providers as PROVIDERS  # type: ignore
    except (ImportError, ModuleNotFoundError):
        PROVIDERS = {}

    KNOWN_PROVIDER_PREFIXES: set[str] = {
        prov["id"] for prov in PROVIDERS.get("data", [])
    }
    ALIASES: tuple[tuple[str, str], ...] = ()
    LENGTH_ALIASES: tuple[tuple[str, str], ...] = ()
    PROVIDER_FIELDS: tuple[str, ...] = ()
    ENTRY_RESOURCE_CLASS: type[EntryResource] = EntryResource
    RELATIONSHIP_ENTRY_TYPES: set[str] = {"references", "structures"}
    TOP_LEVEL_NON_ATTRIBUTES_FIELDS: set[str] = {"id", "type", "relationships", "links"}

    @classmethod
    @lru_cache(maxsize=NUM_ENTRY_TYPES)
    def all_aliases(cls) -> Iterable[tuple[str, str]]:
        """Returns all of the associated aliases for this entry type,
        including those defined by the server config. The first member
        of each tuple is the OPTIMADE-compliant field name, the second
        is the backend-specific field name.

        Returns:
            A tuple of alias tuples.

        """
        from optimade.server.config import CONFIG

        return (
            tuple(
                (f"_{CONFIG.provider.prefix}_{field}", field)
                if not field.startswith("_")
                else (field, field)
                for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
                if isinstance(field, str)
            )
            + tuple(
                (f"_{CONFIG.provider.prefix}_{field['name']}", field["name"])
                if not field["name"].startswith("_")
                else (field["name"], field["name"])
                for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
                if isinstance(field, dict)
            )
            + tuple(
                (f"_{CONFIG.provider.prefix}_{field}", field)
                if not field.startswith("_")
                else (field, field)
                for field in cls.PROVIDER_FIELDS
            )
            + tuple(CONFIG.aliases.get(cls.ENDPOINT, {}).items())
            + cls.ALIASES
        )

    @classproperty
    @lru_cache(maxsize=1)
    def SUPPORTED_PREFIXES(cls) -> set[str]:
        """A set of prefixes handled by this entry type.

        !!! note
            This implementation only includes the provider prefix,
            but in the future this property may be extended to include other
            namespaces (for serving fields from, e.g., other providers or
            domain-specific terms).

        """
        from optimade.server.config import CONFIG

        return {CONFIG.provider.prefix}

    @classproperty
    def ALL_ATTRIBUTES(cls) -> set[str]:
        """Returns all attributes served by this entry."""
        from optimade.server.config import CONFIG

        return (
            set(cls.ENTRY_RESOURCE_ATTRIBUTES)
            .union(
                cls.get_optimade_field(field)
                for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
                if isinstance(field, str)
            )
            .union(
                cls.get_optimade_field(field["name"])
                for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
                if isinstance(field, dict)
            )
            .union({cls.get_optimade_field(field) for field in cls.PROVIDER_FIELDS})
        )

    @classproperty
    def ENTRY_RESOURCE_ATTRIBUTES(cls) -> dict[str, Any]:
        """Returns the dictionary of attributes defined by the underlying entry resource class."""
        from optimade.server.schemas import retrieve_queryable_properties

        return retrieve_queryable_properties(cls.ENTRY_RESOURCE_CLASS)

    @classproperty
    @lru_cache(maxsize=NUM_ENTRY_TYPES)
    def ENDPOINT(cls) -> str:
        """Returns the expected endpoint for this mapper, corresponding
        to the `type` property of the resource class.

        """
        endpoint = cls.ENTRY_RESOURCE_CLASS.model_fields["type"].default
        if not endpoint and not isinstance(endpoint, str):
            raise ValueError("Type not set for this entry type!")
        return endpoint

    @classmethod
    @lru_cache(maxsize=NUM_ENTRY_TYPES)
    def all_length_aliases(cls) -> tuple[tuple[str, str], ...]:
        """Returns all of the associated length aliases for this class,
        including those defined by the server config.

        Returns:
            A tuple of length alias tuples.

        """
        from optimade.server.config import CONFIG

        return cls.LENGTH_ALIASES + tuple(
            CONFIG.length_aliases.get(cls.ENDPOINT, {}).items()
        )

    @classmethod
    @lru_cache(maxsize=128)
    def length_alias_for(cls, field: str) -> Optional[str]:
        """Returns the length alias for the particular field,
        or `None` if no such alias is found.

        Parameters:
            field: OPTIMADE field name.

        Returns:
            Aliased field as found in [`all_length_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_length_aliases].

        """
        return dict(cls.all_length_aliases()).get(field, None)

    @classmethod
    @lru_cache(maxsize=128)
    def get_backend_field(cls, optimade_field: str) -> str:
        """Return the field name configured for the particular
        underlying database for the passed OPTIMADE field name, that would
        be used in an API filter.

        Aliases are read from
        [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

        If a dot-separated OPTIMADE field is provided, e.g., `species.mass`, only the first part will be mapped.
        This means for an (OPTIMADE, DB) alias of (`species`, `kinds`), `get_backend_fields("species.mass")`
        will return `kinds.mass`.

        Arguments:
            optimade_field: The OPTIMADE field to attempt to map to the backend-specific field.

        Examples:
            >>> get_backend_field("chemical_formula_anonymous")
            'formula_anon'
            >>> get_backend_field("formula_anon")
            'formula_anon'
            >>> get_backend_field("_exmpl_custom_provider_field")
            'custom_provider_field'

        Returns:
            The mapped field name to be used in the query to the backend.

        """
        split = optimade_field.split(".")
        alias = dict(cls.all_aliases()).get(split[0], None)
        if alias is not None:
            return alias + ("." + ".".join(split[1:]) if len(split) > 1 else "")
        return optimade_field

    @classmethod
    @lru_cache(maxsize=128)
    def alias_for(cls, field: str) -> str:
        """Return aliased field name.

        !!! warning "Deprecated"
            This method is deprecated could be removed without further warning. Please use
            [`get_backend_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_backend_field].

        Parameters:
            field: OPTIMADE field name.

        Returns:
            Aliased field as found in [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

        """
        warnings.warn(
            "The `.alias_for(...)` method is deprecated, please use `.get_backend_field(...)`.",
            DeprecationWarning,
        )
        return cls.get_backend_field(field)

    @classmethod
    @lru_cache(maxsize=128)
    def get_optimade_field(cls, backend_field: str) -> str:
        """Return the corresponding OPTIMADE field name for the underlying database field,
        ready to be used to construct the OPTIMADE-compliant JSON response.

        Aliases are read from
        [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

        Arguments:
            backend_field: The backend field to attempt to map to an OPTIMADE field.

        Examples:
            >>> get_optimade_field("chemical_formula_anonymous")
            'chemical_formula_anonymous'
            >>> get_optimade_field("formula_anon")
            'chemical_formula_anonymous'
            >>> get_optimade_field("custom_provider_field")
            '_exmpl_custom_provider_field'

        Returns:
            The mapped field name to be used in an OPTIMADE-compliant response.

        """
        return {alias: real for real, alias in cls.all_aliases()}.get(
            backend_field, backend_field
        )

    @classmethod
    @lru_cache(maxsize=128)
    def alias_of(cls, field: str) -> str:
        """Return de-aliased field name, if it exists,
        otherwise return the input field name.

        !!! warning "Deprecated"
            This method is deprecated could be removed without further warning. Please use
            [`get_optimade_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_optimade_field].

        Parameters:
            field: Field name to be de-aliased.

        Returns:
            De-aliased field name, falling back to returning `field`.

        """
        warnings.warn(
            "The `.alias_of(...)` method is deprecated, please use `.get_optimade_field(...)`.",
            DeprecationWarning,
        )
        return cls.get_optimade_field(field)

    @classmethod
    @lru_cache(maxsize=NUM_ENTRY_TYPES)
    def get_required_fields(cls) -> set:
        """Get REQUIRED response fields.

        Returns:
            REQUIRED response fields.

        """
        return cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS

    @classmethod
    def map_back(cls, doc: dict) -> dict:
        """Map properties from MongoDB to OPTIMADE.

        Starting from a MongoDB document `doc`, map the DB fields to the corresponding OPTIMADE fields.
        Then, the fields are all added to the top-level field "attributes",
        with the exception of other top-level fields, defined in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS`.
        All fields not in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS` + "attributes" will be removed.
        Finally, the `type` is given the value of the specified `cls.ENDPOINT`.

        Parameters:
            doc: A resource object in MongoDB format.

        Returns:
            A resource object in OPTIMADE format.

        """
        mapping = ((real, alias) for alias, real in cls.all_aliases())
        newdoc = {}
        reals = {real for _, real in cls.all_aliases()}
        for key in doc:
            if key not in reals:
                newdoc[key] = doc[key]
        for real, alias in mapping:
            if real in doc:
                newdoc[alias] = doc[real]

        if "attributes" in newdoc:
            raise Exception("Will overwrite doc field!")
        attributes = newdoc.copy()

        for field in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
            value = attributes.pop(field, None)
            if value is not None:
                newdoc[field] = value
        for field in list(newdoc.keys()):
            if field not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
                del newdoc[field]

        newdoc["type"] = cls.ENDPOINT
        newdoc["attributes"] = attributes

        return newdoc

    @classmethod
    def deserialize(
        cls, results: Union[dict, Iterable[dict]]
    ) -> Union[list[EntryResource], EntryResource]:
        """Converts the raw database entries for this class into serialized models,
        mapping the data along the way.

        """
        if isinstance(results, dict):
            return cls.ENTRY_RESOURCE_CLASS(**cls.map_back(results))

        return [cls.ENTRY_RESOURCE_CLASS(**cls.map_back(doc)) for doc in results]

ALL_ATTRIBUTES()

Returns all attributes served by this entry.

Source code in optimade/server/mappers/entries.py 
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@classproperty
def ALL_ATTRIBUTES(cls) -> set[str]:
    """Returns all attributes served by this entry."""
    from optimade.server.config import CONFIG

    return (
        set(cls.ENTRY_RESOURCE_ATTRIBUTES)
        .union(
            cls.get_optimade_field(field)
            for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
            if isinstance(field, str)
        )
        .union(
            cls.get_optimade_field(field["name"])
            for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
            if isinstance(field, dict)
        )
        .union({cls.get_optimade_field(field) for field in cls.PROVIDER_FIELDS})
    )

ENDPOINT() cached

Returns the expected endpoint for this mapper, corresponding to the type property of the resource class.

Source code in optimade/server/mappers/entries.py 
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@classproperty
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def ENDPOINT(cls) -> str:
    """Returns the expected endpoint for this mapper, corresponding
    to the `type` property of the resource class.

    """
    endpoint = cls.ENTRY_RESOURCE_CLASS.model_fields["type"].default
    if not endpoint and not isinstance(endpoint, str):
        raise ValueError("Type not set for this entry type!")
    return endpoint

ENTRY_RESOURCE_ATTRIBUTES()

Returns the dictionary of attributes defined by the underlying entry resource class.

Source code in optimade/server/mappers/entries.py 
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@classproperty
def ENTRY_RESOURCE_ATTRIBUTES(cls) -> dict[str, Any]:
    """Returns the dictionary of attributes defined by the underlying entry resource class."""
    from optimade.server.schemas import retrieve_queryable_properties

    return retrieve_queryable_properties(cls.ENTRY_RESOURCE_CLASS)

SUPPORTED_PREFIXES() cached

A set of prefixes handled by this entry type.

Note

This implementation only includes the provider prefix, but in the future this property may be extended to include other namespaces (for serving fields from, e.g., other providers or domain-specific terms).

Source code in optimade/server/mappers/entries.py 
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@classproperty
@lru_cache(maxsize=1)
def SUPPORTED_PREFIXES(cls) -> set[str]:
    """A set of prefixes handled by this entry type.

    !!! note
        This implementation only includes the provider prefix,
        but in the future this property may be extended to include other
        namespaces (for serving fields from, e.g., other providers or
        domain-specific terms).

    """
    from optimade.server.config import CONFIG

    return {CONFIG.provider.prefix}

alias_for(field) cached classmethod

Return aliased field name.

Deprecated

This method is deprecated could be removed without further warning. Please use get_backend_field().

Parameters:

Name Type Description Default
field str

OPTIMADE field name.

 required

Returns:

Type Description
str

Aliased field as found in all_aliases().
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=128)
def alias_for(cls, field: str) -> str:
    """Return aliased field name.

    !!! warning "Deprecated"
        This method is deprecated could be removed without further warning. Please use
        [`get_backend_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_backend_field].

    Parameters:
        field: OPTIMADE field name.

    Returns:
        Aliased field as found in [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

    """
    warnings.warn(
        "The `.alias_for(...)` method is deprecated, please use `.get_backend_field(...)`.",
        DeprecationWarning,
    )
    return cls.get_backend_field(field)

alias_of(field) cached classmethod

Return de-aliased field name, if it exists, otherwise return the input field name.

Deprecated

This method is deprecated could be removed without further warning. Please use get_optimade_field().

Parameters:

Name Type Description Default
field str

Field name to be de-aliased.

 required

Returns:

Type Description
str

De-aliased field name, falling back to returning field.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=128)
def alias_of(cls, field: str) -> str:
    """Return de-aliased field name, if it exists,
    otherwise return the input field name.

    !!! warning "Deprecated"
        This method is deprecated could be removed without further warning. Please use
        [`get_optimade_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_optimade_field].

    Parameters:
        field: Field name to be de-aliased.

    Returns:
        De-aliased field name, falling back to returning `field`.

    """
    warnings.warn(
        "The `.alias_of(...)` method is deprecated, please use `.get_optimade_field(...)`.",
        DeprecationWarning,
    )
    return cls.get_optimade_field(field)

all_aliases() cached classmethod

Returns all of the associated aliases for this entry type, including those defined by the server config. The first member of each tuple is the OPTIMADE-compliant field name, the second is the backend-specific field name.

Returns:

Type Description
Iterable[tuple[str, str]]

A tuple of alias tuples.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_aliases(cls) -> Iterable[tuple[str, str]]:
    """Returns all of the associated aliases for this entry type,
    including those defined by the server config. The first member
    of each tuple is the OPTIMADE-compliant field name, the second
    is the backend-specific field name.

    Returns:
        A tuple of alias tuples.

    """
    from optimade.server.config import CONFIG

    return (
        tuple(
            (f"_{CONFIG.provider.prefix}_{field}", field)
            if not field.startswith("_")
            else (field, field)
            for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
            if isinstance(field, str)
        )
        + tuple(
            (f"_{CONFIG.provider.prefix}_{field['name']}", field["name"])
            if not field["name"].startswith("_")
            else (field["name"], field["name"])
            for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
            if isinstance(field, dict)
        )
        + tuple(
            (f"_{CONFIG.provider.prefix}_{field}", field)
            if not field.startswith("_")
            else (field, field)
            for field in cls.PROVIDER_FIELDS
        )
        + tuple(CONFIG.aliases.get(cls.ENDPOINT, {}).items())
        + cls.ALIASES
    )

all_length_aliases() cached classmethod

Returns all of the associated length aliases for this class, including those defined by the server config.

Returns:

Type Description
tuple[tuple[str, str], ...]

A tuple of length alias tuples.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_length_aliases(cls) -> tuple[tuple[str, str], ...]:
    """Returns all of the associated length aliases for this class,
    including those defined by the server config.

    Returns:
        A tuple of length alias tuples.

    """
    from optimade.server.config import CONFIG

    return cls.LENGTH_ALIASES + tuple(
        CONFIG.length_aliases.get(cls.ENDPOINT, {}).items()
    )

deserialize(results) classmethod

Converts the raw database entries for this class into serialized models, mapping the data along the way.

Source code in optimade/server/mappers/entries.py 
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@classmethod
def deserialize(
    cls, results: Union[dict, Iterable[dict]]
) -> Union[list[EntryResource], EntryResource]:
    """Converts the raw database entries for this class into serialized models,
    mapping the data along the way.

    """
    if isinstance(results, dict):
        return cls.ENTRY_RESOURCE_CLASS(**cls.map_back(results))

    return [cls.ENTRY_RESOURCE_CLASS(**cls.map_back(doc)) for doc in results]

get_backend_field(optimade_field) cached classmethod

Return the field name configured for the particular underlying database for the passed OPTIMADE field name, that would be used in an API filter.

Aliases are read from all_aliases().

If a dot-separated OPTIMADE field is provided, e.g., species.mass, only the first part will be mapped. This means for an (OPTIMADE, DB) alias of (species, kinds), get_backend_fields("species.mass") will return kinds.mass.

Parameters:

Name Type Description Default
optimade_field str

The OPTIMADE field to attempt to map to the backend-specific field.

 required

Examples:

>>> get_backend_field("chemical_formula_anonymous")
'formula_anon'
>>> get_backend_field("formula_anon")
'formula_anon'
>>> get_backend_field("_exmpl_custom_provider_field")
'custom_provider_field'

Returns:

Type Description
str

The mapped field name to be used in the query to the backend.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=128)
def get_backend_field(cls, optimade_field: str) -> str:
    """Return the field name configured for the particular
    underlying database for the passed OPTIMADE field name, that would
    be used in an API filter.

    Aliases are read from
    [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

    If a dot-separated OPTIMADE field is provided, e.g., `species.mass`, only the first part will be mapped.
    This means for an (OPTIMADE, DB) alias of (`species`, `kinds`), `get_backend_fields("species.mass")`
    will return `kinds.mass`.

    Arguments:
        optimade_field: The OPTIMADE field to attempt to map to the backend-specific field.

    Examples:
        >>> get_backend_field("chemical_formula_anonymous")
        'formula_anon'
        >>> get_backend_field("formula_anon")
        'formula_anon'
        >>> get_backend_field("_exmpl_custom_provider_field")
        'custom_provider_field'

    Returns:
        The mapped field name to be used in the query to the backend.

    """
    split = optimade_field.split(".")
    alias = dict(cls.all_aliases()).get(split[0], None)
    if alias is not None:
        return alias + ("." + ".".join(split[1:]) if len(split) > 1 else "")
    return optimade_field

get_optimade_field(backend_field) cached classmethod

Return the corresponding OPTIMADE field name for the underlying database field, ready to be used to construct the OPTIMADE-compliant JSON response.

Aliases are read from all_aliases().

Parameters:

Name Type Description Default
backend_field str

The backend field to attempt to map to an OPTIMADE field.

 required

Examples:

>>> get_optimade_field("chemical_formula_anonymous")
'chemical_formula_anonymous'
>>> get_optimade_field("formula_anon")
'chemical_formula_anonymous'
>>> get_optimade_field("custom_provider_field")
'_exmpl_custom_provider_field'

Returns:

Type Description
str

The mapped field name to be used in an OPTIMADE-compliant response.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=128)
def get_optimade_field(cls, backend_field: str) -> str:
    """Return the corresponding OPTIMADE field name for the underlying database field,
    ready to be used to construct the OPTIMADE-compliant JSON response.

    Aliases are read from
    [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].

    Arguments:
        backend_field: The backend field to attempt to map to an OPTIMADE field.

    Examples:
        >>> get_optimade_field("chemical_formula_anonymous")
        'chemical_formula_anonymous'
        >>> get_optimade_field("formula_anon")
        'chemical_formula_anonymous'
        >>> get_optimade_field("custom_provider_field")
        '_exmpl_custom_provider_field'

    Returns:
        The mapped field name to be used in an OPTIMADE-compliant response.

    """
    return {alias: real for real, alias in cls.all_aliases()}.get(
        backend_field, backend_field
    )

get_required_fields() cached classmethod

Get REQUIRED response fields.

Returns:

Type Description
set

REQUIRED response fields.
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def get_required_fields(cls) -> set:
    """Get REQUIRED response fields.

    Returns:
        REQUIRED response fields.

    """
    return cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS

length_alias_for(field) cached classmethod

Returns the length alias for the particular field, or None if no such alias is found.

Parameters:

Name Type Description Default
field str

OPTIMADE field name.

 required

Returns:

Type Description
Optional[str]

Aliased field as found in all_length_aliases().
Source code in optimade/server/mappers/entries.py 
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@classmethod
@lru_cache(maxsize=128)
def length_alias_for(cls, field: str) -> Optional[str]:
    """Returns the length alias for the particular field,
    or `None` if no such alias is found.

    Parameters:
        field: OPTIMADE field name.

    Returns:
        Aliased field as found in [`all_length_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_length_aliases].

    """
    return dict(cls.all_length_aliases()).get(field, None)

map_back(doc) classmethod

Map properties from MongoDB to OPTIMADE.

Starting from a MongoDB document doc, map the DB fields to the corresponding OPTIMADE fields. Then, the fields are all added to the top-level field "attributes", with the exception of other top-level fields, defined in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS. All fields not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS + "attributes" will be removed. Finally, the type is given the value of the specified cls.ENDPOINT.

Parameters:

Name Type Description Default
doc dict

A resource object in MongoDB format.

 required

Returns:

Type Description
dict

A resource object in OPTIMADE format.
Source code in optimade/server/mappers/entries.py 
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@classmethod
def map_back(cls, doc: dict) -> dict:
    """Map properties from MongoDB to OPTIMADE.

    Starting from a MongoDB document `doc`, map the DB fields to the corresponding OPTIMADE fields.
    Then, the fields are all added to the top-level field "attributes",
    with the exception of other top-level fields, defined in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS`.
    All fields not in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS` + "attributes" will be removed.
    Finally, the `type` is given the value of the specified `cls.ENDPOINT`.

    Parameters:
        doc: A resource object in MongoDB format.

    Returns:
        A resource object in OPTIMADE format.

    """
    mapping = ((real, alias) for alias, real in cls.all_aliases())
    newdoc = {}
    reals = {real for _, real in cls.all_aliases()}
    for key in doc:
        if key not in reals:
            newdoc[key] = doc[key]
    for real, alias in mapping:
        if real in doc:
            newdoc[alias] = doc[real]

    if "attributes" in newdoc:
        raise Exception("Will overwrite doc field!")
    attributes = newdoc.copy()

    for field in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
        value = attributes.pop(field, None)
        if value is not None:
            newdoc[field] = value
    for field in list(newdoc.keys()):
        if field not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
            del newdoc[field]

    newdoc["type"] = cls.ENDPOINT
    newdoc["attributes"] = attributes

    return newdoc

EntryListingQueryParams

Bases: BaseQueryParams

Common query params for all Entry listing endpoints.

Attributes:

Name Type Description
filter str

A filter string, in the format described in section API Filtering Format Specification of the specification.
response_format str

The output format requested (see section Response Format). Defaults to the format string 'json', which specifies the standard output format described in this specification.

Example: http://example.com/v1/structures?response_format=xml
email_address EmailStr

An email address of the user making the request. The email SHOULD be that of a person and not an automatic system.

Example: http://example.com/v1/structures?email_address=user@example.com
response_fields str

A comma-delimited set of fields to be provided in the output. If provided, these fields MUST be returned along with the REQUIRED fields. Other OPTIONAL fields MUST NOT be returned when this parameter is present.

Example: http://example.com/v1/structures?response_fields=last_modified,nsites
sort str

If supporting sortable queries, an implementation MUST use the sort query parameter with format as specified by JSON API 1.0.

An implementation MAY support multiple sort fields for a single query. If it does, it again MUST conform to the JSON API 1.0 specification.

If an implementation supports sorting for an entry listing endpoint, then the /info/<entries> endpoint MUST include, for each field name <fieldname> in its data.properties.<fieldname> response value that can be used for sorting, the key sortable with value true. If a field name under an entry listing endpoint supporting sorting cannot be used for sorting, the server MUST either leave out the sortable key or set it equal to false for the specific field name. The set of field names, with sortable equal to true are allowed to be used in the "sort fields" list according to its definition in the JSON API 1.0 specification. The field sortable is in addition to each property description and other OPTIONAL fields. An example is shown in the section Entry Listing Info Endpoints.
page_limit int

Sets a numerical limit on the number of entries returned. See JSON API 1.0. The API implementation MUST return no more than the number specified. It MAY return fewer. The database MAY have a maximum limit and not accept larger numbers (in which case an error code -- 403 Forbidden -- MUST be returned). The default limit value is up to the API implementation to decide.

Example: http://example.com/optimade/v1/structures?page_limit=100
page_offset int

RECOMMENDED for use with offset-based pagination: using page_offset and page_limit is RECOMMENDED.

Example: Skip 50 structures and fetch up to 100: /structures?page_offset=50&page_limit=100.
page_number int

RECOMMENDED for use with page-based pagination: using page_number and page_limit is RECOMMENDED. It is RECOMMENDED that the first page has number 1, i.e., that page_number is 1-based.

Example: Fetch page 2 of up to 50 structures per page: /structures?page_number=2&page_limit=50.
page_cursor int

RECOMMENDED for use with cursor-based pagination: using page_cursor and page_limit is RECOMMENDED.
page_above str

RECOMMENDED for use with value-based pagination: using page_above/page_below and page_limit is RECOMMENDED.

Example: Fetch up to 100 structures above sort-field value 4000 (in this example, server chooses to fetch results sorted by increasing id, so page_above value refers to an id value): /structures?page_above=4000&page_limit=100.
page_below str

RECOMMENDED for use with value-based pagination: using page_above/page_below and page_limit is RECOMMENDED.
include str

A server MAY implement the JSON API concept of returning compound documents by utilizing the include query parameter as specified by JSON API 1.0.

All related resource objects MUST be returned as part of an array value for the top-level included field, see the section JSON Response Schema: Common Fields.

The value of include MUST be a comma-separated list of "relationship paths", as defined in the JSON API. If relationship paths are not supported, or a server is unable to identify a relationship path a 400 Bad Request response MUST be made.

The default value for include is references. This means references entries MUST always be included under the top-level field included as default, since a server assumes if include is not specified by a client in the request, it is still specified as include=references. Note, if a client explicitly specifies include and leaves out references, references resource objects MUST NOT be included under the top-level field included, as per the definition of included, see section JSON Response Schema: Common Fields.

Note: A query with the parameter include set to the empty string means no related resource objects are to be returned under the top-level field included.
api_hint str

If the client provides the parameter, the value SHOULD have the format vMAJOR or vMAJOR.MINOR, where MAJOR is a major version and MINOR is a minor version of the API. For example, if a client appends api_hint=v1.0 to the query string, the hint provided is for major version 1 and minor version 0.
Source code in optimade/server/query_params.py 
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class EntryListingQueryParams(BaseQueryParams):
    """
    Common query params for all Entry listing endpoints.

    Attributes:
        filter (str): A filter string, in the format described in section API Filtering Format Specification of the specification.

        response_format (str): The output format requested (see section Response Format).
            Defaults to the format string 'json', which specifies the standard output format described in this specification.

            **Example**: `http://example.com/v1/structures?response_format=xml`

        email_address (EmailStr): An email address of the user making the request.
            The email SHOULD be that of a person and not an automatic system.

            **Example**: `http://example.com/v1/structures?email_address=user@example.com`

        response_fields (str): A comma-delimited set of fields to be provided in the output.
            If provided, these fields MUST be returned along with the REQUIRED fields.
            Other OPTIONAL fields MUST NOT be returned when this parameter is present.

            **Example**: `http://example.com/v1/structures?response_fields=last_modified,nsites`

        sort (str): If supporting sortable queries, an implementation MUST use the `sort` query parameter with format as specified
            by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-sorting).

            An implementation MAY support multiple sort fields for a single query.
            If it does, it again MUST conform to the JSON API 1.0 specification.

            If an implementation supports sorting for an entry listing endpoint, then the `/info/<entries>` endpoint MUST include,
            for each field name `<fieldname>` in its `data.properties.<fieldname>` response value that can be used for sorting,
            the key `sortable` with value `true`.
            If a field name under an entry listing endpoint supporting sorting cannot be used for sorting, the server MUST either
            leave out the `sortable` key or set it equal to `false` for the specific field name.
            The set of field names, with `sortable` equal to `true` are allowed to be used in the "sort fields" list according to
            its definition in the JSON API 1.0 specification.
            The field `sortable` is in addition to each property description and other OPTIONAL fields.
            An example is shown in the section Entry Listing Info Endpoints.

        page_limit (int): Sets a numerical limit on the number of entries returned.
            See [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-pagination).
            The API implementation MUST return no more than the number specified.
            It MAY return fewer. The database MAY have a maximum limit and not accept larger numbers
            (in which case an error code -- `403 Forbidden` -- MUST be returned).
            The default limit value is up to the API implementation to decide.

            **Example**: `http://example.com/optimade/v1/structures?page_limit=100`

        page_offset (int): RECOMMENDED for use with _offset-based_ pagination: using `page_offset` and `page_limit` is RECOMMENDED.

            **Example**: Skip 50 structures and fetch up to 100: `/structures?page_offset=50&page_limit=100`.

        page_number (int): RECOMMENDED for use with _page-based_ pagination: using `page_number` and `page_limit` is RECOMMENDED.
            It is RECOMMENDED that the first page has number 1, i.e., that `page_number` is 1-based.

            **Example**: Fetch page 2 of up to 50 structures per page: `/structures?page_number=2&page_limit=50`.

        page_cursor (int): RECOMMENDED for use with _cursor-based_ pagination: using `page_cursor` and `page_limit` is RECOMMENDED.

        page_above (str): RECOMMENDED for use with _value-based_ pagination: using `page_above`/`page_below` and `page_limit` is RECOMMENDED.

            **Example**: Fetch up to 100 structures above sort-field value 4000 (in this example, server chooses to fetch results sorted by
            increasing `id`, so `page_above` value refers to an `id` value): `/structures?page_above=4000&page_limit=100`.

        page_below (str): RECOMMENDED for use with _value-based_ pagination: using `page_above`/`page_below` and `page_limit` is RECOMMENDED.

        include (str): A server MAY implement the JSON API concept of returning [compound documents](https://jsonapi.org/format/1.0/#document-compound-documents)
            by utilizing the `include` query parameter as specified by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-includes).

            All related resource objects MUST be returned as part of an array value for the top-level `included` field,
            see the section JSON Response Schema: Common Fields.

            The value of `include` MUST be a comma-separated list of "relationship paths", as defined in the [JSON API](https://jsonapi.org/format/1.0/#fetching-includes).
            If relationship paths are not supported, or a server is unable to identify a relationship path a `400 Bad Request` response MUST be made.

            The **default value** for `include` is `references`. This means `references` entries MUST always be included under the top-level field
            `included` as default, since a server assumes if `include` is not specified by a client in the request, it is still specified as `include=references`.
            Note, if a client explicitly specifies `include` and leaves out `references`, `references` resource objects MUST NOT be included under the top-level
            field `included`, as per the definition of `included`, see section JSON Response Schema: Common Fields.

            **Note**: A query with the parameter `include` set to the empty string means no related resource objects are to be returned under the top-level field `included`.

        api_hint (str): If the client provides the parameter, the value SHOULD have the format `vMAJOR` or `vMAJOR.MINOR`,
            where MAJOR is a major version and MINOR is a minor version of the API.
            For example, if a client appends `api_hint=v1.0` to the query string, the hint provided is for major version 1 and minor version 0.

    """

    # The reference server implementation only supports offset/number-based pagination
    unsupported_params: list[str] = [
        "page_cursor",
        "page_below",
    ]

    def __init__(
        self,
        *,
        filter: Annotated[
            str,
            Query(  # pylint: disable=redefined-builtin
                description="A filter string, in the format described in section API Filtering Format Specification of the specification.",
            ),
        ] = "",
        response_format: Annotated[
            str,
            Query(
                description="The output format requested (see section Response Format).\nDefaults to the format string 'json', which specifies the standard output format described in this specification.\nExample: `http://example.com/v1/structures?response_format=xml`",
            ),
        ] = "json",
        email_address: Annotated[
            EmailStr,
            Query(
                description="An email address of the user making the request.\nThe email SHOULD be that of a person and not an automatic system.\nExample: `http://example.com/v1/structures?email_address=user@example.com`",
            ),
        ] = "",
        response_fields: Annotated[
            str,
            Query(
                description="A comma-delimited set of fields to be provided in the output.\nIf provided, these fields MUST be returned along with the REQUIRED fields.\nOther OPTIONAL fields MUST NOT be returned when this parameter is present.\nExample: `http://example.com/v1/structures?response_fields=last_modified,nsites`",
                pattern=r"([a-z_][a-z_0-9]*(,[a-z_][a-z_0-9]*)*)?",
            ),
        ] = "",
        sort: Annotated[
            str,
            Query(
                description='If supporting sortable queries, an implementation MUST use the `sort` query parameter with format as specified by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-sorting).\n\nAn implementation MAY support multiple sort fields for a single query.\nIf it does, it again MUST conform to the JSON API 1.0 specification.\n\nIf an implementation supports sorting for an entry listing endpoint, then the `/info/<entries>` endpoint MUST include, for each field name `<fieldname>` in its `data.properties.<fieldname>` response value that can be used for sorting, the key `sortable` with value `true`.\nIf a field name under an entry listing endpoint supporting sorting cannot be used for sorting, the server MUST either leave out the `sortable` key or set it equal to `false` for the specific field name.\nThe set of field names, with `sortable` equal to `true` are allowed to be used in the "sort fields" list according to its definition in the JSON API 1.0 specification.\nThe field `sortable` is in addition to each property description and other OPTIONAL fields.\nAn example is shown in the section Entry Listing Info Endpoints.',
                pattern=r"([a-z_][a-z_0-9]*(,[a-z_][a-z_0-9]*)*)?",
            ),
        ] = "",
        page_limit: Annotated[
            int,
            Query(
                description="Sets a numerical limit on the number of entries returned.\nSee [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-pagination).\nThe API implementation MUST return no more than the number specified.\nIt MAY return fewer.\nThe database MAY have a maximum limit and not accept larger numbers (in which case an error code -- 403 Forbidden -- MUST be returned).\nThe default limit value is up to the API implementation to decide.\nExample: `http://example.com/optimade/v1/structures?page_limit=100`",
                ge=0,
            ),
        ] = CONFIG.page_limit,
        page_offset: Annotated[
            int,
            Query(
                description="RECOMMENDED for use with _offset-based_ pagination: using `page_offset` and `page_limit` is RECOMMENDED.\nExample: Skip 50 structures and fetch up to 100: `/structures?page_offset=50&page_limit=100`.",
                ge=0,
            ),
        ] = 0,
        page_number: Annotated[
            int,
            Query(
                description="RECOMMENDED for use with _page-based_ pagination: using `page_number` and `page_limit` is RECOMMENDED.\nIt is RECOMMENDED that the first page has number 1, i.e., that `page_number` is 1-based.\nExample: Fetch page 2 of up to 50 structures per page: `/structures?page_number=2&page_limit=50`.",
                # ge=1,  # This constraint is only 'RECOMMENDED' in the specification, so should not be included here or in the OpenAPI schema
            ),
        ] = None,  # type: ignore[assignment]
        page_cursor: Annotated[
            int,
            Query(
                description="RECOMMENDED for use with _cursor-based_ pagination: using `page_cursor` and `page_limit` is RECOMMENDED.",
                ge=0,
            ),
        ] = 0,
        page_above: Annotated[
            str,
            Query(
                description="RECOMMENDED for use with _value-based_ pagination: using `page_above`/`page_below` and `page_limit` is RECOMMENDED.\nExample: Fetch up to 100 structures above sort-field value 4000 (in this example, server chooses to fetch results sorted by increasing `id`, so `page_above` value refers to an `id` value): `/structures?page_above=4000&page_limit=100`.",
            ),
        ] = None,  # type: ignore[assignment]
        page_below: Annotated[
            str,
            Query(
                description="RECOMMENDED for use with _value-based_ pagination: using `page_above`/`page_below` and `page_limit` is RECOMMENDED.",
            ),
        ] = None,  # type: ignore[assignment]
        include: Annotated[
            str,
            Query(
                description='A server MAY implement the JSON API concept of returning [compound documents](https://jsonapi.org/format/1.0/#document-compound-documents) by utilizing the `include` query parameter as specified by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-includes).\n\nAll related resource objects MUST be returned as part of an array value for the top-level `included` field, see the section JSON Response Schema: Common Fields.\n\nThe value of `include` MUST be a comma-separated list of "relationship paths", as defined in the [JSON API](https://jsonapi.org/format/1.0/#fetching-includes).\nIf relationship paths are not supported, or a server is unable to identify a relationship path a `400 Bad Request` response MUST be made.\n\nThe **default value** for `include` is `references`.\nThis means `references` entries MUST always be included under the top-level field `included` as default, since a server assumes if `include` is not specified by a client in the request, it is still specified as `include=references`.\nNote, if a client explicitly specifies `include` and leaves out `references`, `references` resource objects MUST NOT be included under the top-level field `included`, as per the definition of `included`, see section JSON Response Schema: Common Fields.\n\n> **Note**: A query with the parameter `include` set to the empty string means no related resource objects are to be returned under the top-level field `included`.',
            ),
        ] = "references",
        api_hint: Annotated[
            str,
            Query(
                description="If the client provides the parameter, the value SHOULD have the format `vMAJOR` or `vMAJOR.MINOR`, where MAJOR is a major version and MINOR is a minor version of the API. For example, if a client appends `api_hint=v1.0` to the query string, the hint provided is for major version 1 and minor version 0.",
                pattern=r"(v[0-9]+(\.[0-9]+)?)?",
            ),
        ] = "",
    ):
        self.filter = filter
        self.response_format = response_format
        self.email_address = email_address
        self.response_fields = response_fields
        self.sort = sort
        self.page_limit = page_limit
        self.page_offset = page_offset
        self.page_number = page_number
        self.page_cursor = page_cursor
        self.page_above = page_above
        self.page_below = page_below
        self.include = include
        self.api_hint = api_hint

check_params(query_params)

This method checks whether all the query parameters that are specified in the URL string are implemented in the relevant *QueryParams class.

This method handles four cases:

  • If a query parameter is passed that is not defined in the relevant *QueryParams class, and it is not prefixed with a known provider prefix, then a BadRequest is raised.
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with a known provider prefix, then the parameter is silently ignored
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with an unknown provider prefix, then a UnknownProviderQueryParameter warning is emitted.
  • If a query parameter is passed that is on the unsupported_params list for the inherited class, then a QueryParamNotUsed warning is emitted.

Parameters:

Name Type Description Default
query_params Iterable[str]

An iterable of the request's string query parameters.

 required

Raises:

Type Description
`BadRequest`

if the query parameter was not found in the relevant class, or if it does not have a valid prefix.
Source code in optimade/server/query_params.py 
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def check_params(self, query_params: Iterable[str]) -> None:
    """This method checks whether all the query parameters that are specified
    in the URL string are implemented in the relevant `*QueryParams` class.

    This method handles four cases:

    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      and it is not prefixed with a known provider prefix, then a `BadRequest` is raised.
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with a known provider prefix, then the parameter is silently ignored
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with an unknown provider prefix, then a `UnknownProviderQueryParameter`
      warning is emitted.
    * If a query parameter is passed that is on the `unsupported_params` list for the inherited
      class, then a `QueryParamNotUsed` warning is emitted.

    Arguments:
        query_params: An iterable of the request's string query parameters.

    Raises:
        `BadRequest`: if the query parameter was not found in the relevant class, or if it
            does not have a valid prefix.

    """
    if not getattr(CONFIG, "validate_query_parameters", False):
        return
    errors = []
    warnings = []
    unsupported_warnings = []
    for param in query_params:
        if param in self.unsupported_params:
            unsupported_warnings.append(param)
        if not hasattr(self, param):
            split_param = param.split("_")
            if param.startswith("_") and len(split_param) > 2:
                prefix = split_param[1]
                if prefix in BaseResourceMapper.SUPPORTED_PREFIXES:
                    errors.append(param)
                elif prefix not in BaseResourceMapper.KNOWN_PROVIDER_PREFIXES:
                    warnings.append(param)
            else:
                errors.append(param)

    if warnings:
        warn(
            f"The query parameter(s) '{warnings}' are unrecognised and have been ignored.",
            UnknownProviderQueryParameter,
        )

    if unsupported_warnings:
        warn(
            f"The query parameter(s) '{unsupported_warnings}' are not supported by this server and have been ignored.",
            QueryParamNotUsed,
        )

    if errors:
        raise BadRequest(
            f"The query parameter(s) '{errors}' are not recognised by this endpoint."
        )

QueryParamNotUsed

Bases: OptimadeWarning

A query parameter is not used in this request.

Source code in optimade/warnings.py 
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class QueryParamNotUsed(OptimadeWarning):
    """A query parameter is not used in this request."""

SingleEntryQueryParams

Bases: BaseQueryParams

Common query params for single entry endpoints.

Attributes:

Name Type Description
response_format str

The output format requested (see section Response Format). Defaults to the format string 'json', which specifies the standard output format described in this specification.

Example: http://example.com/v1/structures?response_format=xml
email_address EmailStr

An email address of the user making the request. The email SHOULD be that of a person and not an automatic system.

Example: http://example.com/v1/structures?email_address=user@example.com
response_fields str

A comma-delimited set of fields to be provided in the output. If provided, these fields MUST be returned along with the REQUIRED fields. Other OPTIONAL fields MUST NOT be returned when this parameter is present.

Example: http://example.com/v1/structures?response_fields=last_modified,nsites
include str

A server MAY implement the JSON API concept of returning compound documents by utilizing the include query parameter as specified by JSON API 1.0.

All related resource objects MUST be returned as part of an array value for the top-level included field, see the section JSON Response Schema: Common Fields.

The value of include MUST be a comma-separated list of "relationship paths", as defined in the JSON API. If relationship paths are not supported, or a server is unable to identify a relationship path a 400 Bad Request response MUST be made.

The default value for include is references. This means references entries MUST always be included under the top-level field included as default, since a server assumes if include is not specified by a client in the request, it is still specified as include=references. Note, if a client explicitly specifies include and leaves out references, references resource objects MUST NOT be included under the top-level field included, as per the definition of included, see section JSON Response Schema: Common Fields.

Note: A query with the parameter include set to the empty string means no related resource objects are to be returned under the top-level field included.
api_hint str

If the client provides the parameter, the value SHOULD have the format vMAJOR or vMAJOR.MINOR, where MAJOR is a major version and MINOR is a minor version of the API. For example, if a client appends api_hint=v1.0 to the query string, the hint provided is for major version 1 and minor version 0.
Source code in optimade/server/query_params.py 
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class SingleEntryQueryParams(BaseQueryParams):
    """
    Common query params for single entry endpoints.

    Attributes:
        response_format (str): The output format requested (see section Response Format).
            Defaults to the format string 'json', which specifies the standard output format described in this specification.

            **Example**: `http://example.com/v1/structures?response_format=xml`

        email_address (EmailStr): An email address of the user making the request.
            The email SHOULD be that of a person and not an automatic system.

            **Example**: `http://example.com/v1/structures?email_address=user@example.com`

        response_fields (str): A comma-delimited set of fields to be provided in the output.
            If provided, these fields MUST be returned along with the REQUIRED fields.
            Other OPTIONAL fields MUST NOT be returned when this parameter is present.

            **Example**: `http://example.com/v1/structures?response_fields=last_modified,nsites`

        include (str): A server MAY implement the JSON API concept of returning [compound documents](https://jsonapi.org/format/1.0/#document-compound-documents)
            by utilizing the `include` query parameter as specified by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-includes).

            All related resource objects MUST be returned as part of an array value for the top-level `included` field,
            see the section JSON Response Schema: Common Fields.

            The value of `include` MUST be a comma-separated list of "relationship paths", as defined in the [JSON API](https://jsonapi.org/format/1.0/#fetching-includes).
            If relationship paths are not supported, or a server is unable to identify a relationship path a `400 Bad Request` response MUST be made.

            The **default value** for `include` is `references`. This means `references` entries MUST always be included under the top-level field
            `included` as default, since a server assumes if `include` is not specified by a client in the request, it is still specified as `include=references`.
            Note, if a client explicitly specifies `include` and leaves out `references`, `references` resource objects MUST NOT be included under the top-level
            field `included`, as per the definition of `included`, see section JSON Response Schema: Common Fields.

            **Note**: A query with the parameter `include` set to the empty string means no related resource objects are to be returned under the top-level field `included`.

        api_hint (str): If the client provides the parameter, the value SHOULD have the format `vMAJOR` or `vMAJOR.MINOR`,
            where MAJOR is a major version and MINOR is a minor version of the API.
            For example, if a client appends `api_hint=v1.0` to the query string, the hint provided is for major version 1 and minor version 0.

    """

    def __init__(
        self,
        *,
        response_format: Annotated[
            str,
            Query(
                description="The output format requested (see section Response Format).\nDefaults to the format string 'json', which specifies the standard output format described in this specification.\nExample: `http://example.com/v1/structures?response_format=xml`",
            ),
        ] = "json",
        email_address: Annotated[
            EmailStr,
            Query(
                description="An email address of the user making the request.\nThe email SHOULD be that of a person and not an automatic system.\nExample: `http://example.com/v1/structures?email_address=user@example.com`",
            ),
        ] = "",
        response_fields: Annotated[
            str,
            Query(
                description="A comma-delimited set of fields to be provided in the output.\nIf provided, these fields MUST be returned along with the REQUIRED fields.\nOther OPTIONAL fields MUST NOT be returned when this parameter is present.\nExample: `http://example.com/v1/structures?response_fields=last_modified,nsites`",
                pattern=r"([a-z_][a-z_0-9]*(,[a-z_][a-z_0-9]*)*)?",
            ),
        ] = "",
        include: Annotated[
            str,
            Query(
                description='A server MAY implement the JSON API concept of returning [compound documents](https://jsonapi.org/format/1.0/#document-compound-documents) by utilizing the `include` query parameter as specified by [JSON API 1.0](https://jsonapi.org/format/1.0/#fetching-includes).\n\nAll related resource objects MUST be returned as part of an array value for the top-level `included` field, see the section JSON Response Schema: Common Fields.\n\nThe value of `include` MUST be a comma-separated list of "relationship paths", as defined in the [JSON API](https://jsonapi.org/format/1.0/#fetching-includes).\nIf relationship paths are not supported, or a server is unable to identify a relationship path a `400 Bad Request` response MUST be made.\n\nThe **default value** for `include` is `references`.\nThis means `references` entries MUST always be included under the top-level field `included` as default, since a server assumes if `include` is not specified by a client in the request, it is still specified as `include=references`.\nNote, if a client explicitly specifies `include` and leaves out `references`, `references` resource objects MUST NOT be included under the top-level field `included`, as per the definition of `included`, see section JSON Response Schema: Common Fields.\n\n> **Note**: A query with the parameter `include` set to the empty string means no related resource objects are to be returned under the top-level field `included`.',
            ),
        ] = "references",
        api_hint: Annotated[
            str,
            Query(
                description="If the client provides the parameter, the value SHOULD have the format `vMAJOR` or `vMAJOR.MINOR`, where MAJOR is a major version and MINOR is a minor version of the API. For example, if a client appends `api_hint=v1.0` to the query string, the hint provided is for major version 1 and minor version 0.",
                pattern=r"(v[0-9]+(\.[0-9]+)?)?",
            ),
        ] = "",
    ):
        self.response_format = response_format
        self.email_address = email_address
        self.response_fields = response_fields
        self.include = include
        self.api_hint = api_hint

check_params(query_params)

This method checks whether all the query parameters that are specified in the URL string are implemented in the relevant *QueryParams class.

This method handles four cases:

  • If a query parameter is passed that is not defined in the relevant *QueryParams class, and it is not prefixed with a known provider prefix, then a BadRequest is raised.
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with a known provider prefix, then the parameter is silently ignored
  • If a query parameter is passed that is not defined in the relevant *QueryParams class, that is prefixed with an unknown provider prefix, then a UnknownProviderQueryParameter warning is emitted.
  • If a query parameter is passed that is on the unsupported_params list for the inherited class, then a QueryParamNotUsed warning is emitted.

Parameters:

Name Type Description Default
query_params Iterable[str]

An iterable of the request's string query parameters.

 required

Raises:

Type Description
`BadRequest`

if the query parameter was not found in the relevant class, or if it does not have a valid prefix.
Source code in optimade/server/query_params.py 
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def check_params(self, query_params: Iterable[str]) -> None:
    """This method checks whether all the query parameters that are specified
    in the URL string are implemented in the relevant `*QueryParams` class.

    This method handles four cases:

    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      and it is not prefixed with a known provider prefix, then a `BadRequest` is raised.
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with a known provider prefix, then the parameter is silently ignored
    * If a query parameter is passed that is not defined in the relevant `*QueryParams` class,
      that is prefixed with an unknown provider prefix, then a `UnknownProviderQueryParameter`
      warning is emitted.
    * If a query parameter is passed that is on the `unsupported_params` list for the inherited
      class, then a `QueryParamNotUsed` warning is emitted.

    Arguments:
        query_params: An iterable of the request's string query parameters.

    Raises:
        `BadRequest`: if the query parameter was not found in the relevant class, or if it
            does not have a valid prefix.

    """
    if not getattr(CONFIG, "validate_query_parameters", False):
        return
    errors = []
    warnings = []
    unsupported_warnings = []
    for param in query_params:
        if param in self.unsupported_params:
            unsupported_warnings.append(param)
        if not hasattr(self, param):
            split_param = param.split("_")
            if param.startswith("_") and len(split_param) > 2:
                prefix = split_param[1]
                if prefix in BaseResourceMapper.SUPPORTED_PREFIXES:
                    errors.append(param)
                elif prefix not in BaseResourceMapper.KNOWN_PROVIDER_PREFIXES:
                    warnings.append(param)
            else:
                errors.append(param)

    if warnings:
        warn(
            f"The query parameter(s) '{warnings}' are unrecognised and have been ignored.",
            UnknownProviderQueryParameter,
        )

    if unsupported_warnings:
        warn(
            f"The query parameter(s) '{unsupported_warnings}' are not supported by this server and have been ignored.",
            QueryParamNotUsed,
        )

    if errors:
        raise BadRequest(
            f"The query parameter(s) '{errors}' are not recognised by this endpoint."
        )

UnknownProviderQueryParameter

Bases: OptimadeWarning

A provider-specific query parameter has been requested in the query with a prefix not recognised by this implementation.

Source code in optimade/warnings.py 
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class UnknownProviderQueryParameter(OptimadeWarning):
    """A provider-specific query parameter has been requested in the query with a prefix not
    recognised by this implementation.

    """