entries¶
BaseResourceMapper
¶
Generic Resource Mapper that defines and performs the mapping between objects in the database and the resource objects defined by the specification.
Attributes:
Name | Type | Description |
---|---|---|
ALIASES |
tuple |
a tuple of aliases between
OPTIMADE field names and the field names in the database ,
e.g. |
LENGTH_ALIASES |
tuple |
a tuple of aliases between
a field name and another field that defines its length, to be used
when querying, e.g. |
ENTRY_RESOURCE_CLASS |
type |
The entry type that this mapper corresponds to. |
PROVIDER_FIELDS |
tuple |
a tuple of extra field names that this mapper should support when querying with the database prefix. |
TOP_LEVEL_NON_ATTRIBUTES_FIELDS |
set |
the set of top-level field names common to all endpoints. |
SUPPORTED_PREFIXES |
The set of prefixes registered by this mapper. |
|
ALL_ATTRIBUTES |
The set of attributes defined across the entry resource class and the server configuration. |
|
ENTRY_RESOURCE_ATTRIBUTES |
A dictionary of attributes and their definitions defined by the schema of the entry resource class. |
|
ENDPOINT |
The expected endpoint name for this resource, as defined by
the |
Source code in optimade/server/mappers/entries.py
class BaseResourceMapper:
"""Generic Resource Mapper that defines and performs the mapping
between objects in the database and the resource objects defined by
the specification.
Attributes:
ALIASES: a tuple of aliases between
OPTIMADE field names and the field names in the database ,
e.g. `(("elements", "custom_elements_field"))`.
LENGTH_ALIASES: a tuple of aliases between
a field name and another field that defines its length, to be used
when querying, e.g. `(("elements", "nelements"))`.
e.g. `(("elements", "custom_elements_field"))`.
ENTRY_RESOURCE_CLASS: The entry type that this mapper corresponds to.
PROVIDER_FIELDS: a tuple of extra field names that this
mapper should support when querying with the database prefix.
TOP_LEVEL_NON_ATTRIBUTES_FIELDS: the set of top-level
field names common to all endpoints.
SUPPORTED_PREFIXES: The set of prefixes registered by this mapper.
ALL_ATTRIBUTES: The set of attributes defined across the entry
resource class and the server configuration.
ENTRY_RESOURCE_ATTRIBUTES: A dictionary of attributes and their definitions
defined by the schema of the entry resource class.
ENDPOINT: The expected endpoint name for this resource, as defined by
the `type` in the schema of the entry resource class.
"""
try:
from optimade.server.data import providers as PROVIDERS # type: ignore
except (ImportError, ModuleNotFoundError):
PROVIDERS = {}
KNOWN_PROVIDER_PREFIXES: set[str] = {
prov["id"] for prov in PROVIDERS.get("data", [])
}
ALIASES: tuple[tuple[str, str], ...] = ()
LENGTH_ALIASES: tuple[tuple[str, str], ...] = ()
PROVIDER_FIELDS: tuple[str, ...] = ()
ENTRY_RESOURCE_CLASS: type[EntryResource] = EntryResource
RELATIONSHIP_ENTRY_TYPES: set[str] = {"references", "structures"}
TOP_LEVEL_NON_ATTRIBUTES_FIELDS: set[str] = {"id", "type", "relationships", "links"}
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_aliases(cls) -> Iterable[tuple[str, str]]:
"""Returns all of the associated aliases for this entry type,
including those defined by the server config. The first member
of each tuple is the OPTIMADE-compliant field name, the second
is the backend-specific field name.
Returns:
A tuple of alias tuples.
"""
from optimade.server.config import CONFIG
return (
tuple(
(f"_{CONFIG.provider.prefix}_{field}", field)
if not field.startswith("_")
else (field, field)
for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
if isinstance(field, str)
)
+ tuple(
(f"_{CONFIG.provider.prefix}_{field['name']}", field["name"])
if not field["name"].startswith("_")
else (field["name"], field["name"])
for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
if isinstance(field, dict)
)
+ tuple(
(f"_{CONFIG.provider.prefix}_{field}", field)
if not field.startswith("_")
else (field, field)
for field in cls.PROVIDER_FIELDS
)
+ tuple(CONFIG.aliases.get(cls.ENDPOINT, {}).items())
+ cls.ALIASES
)
@classproperty
@lru_cache(maxsize=1)
def SUPPORTED_PREFIXES(cls) -> set[str]:
"""A set of prefixes handled by this entry type.
!!! note
This implementation only includes the provider prefix,
but in the future this property may be extended to include other
namespaces (for serving fields from, e.g., other providers or
domain-specific terms).
"""
from optimade.server.config import CONFIG
return {CONFIG.provider.prefix}
@classproperty
def ALL_ATTRIBUTES(cls) -> set[str]:
"""Returns all attributes served by this entry."""
from optimade.server.config import CONFIG
return (
set(cls.ENTRY_RESOURCE_ATTRIBUTES)
.union(
cls.get_optimade_field(field)
for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
if isinstance(field, str)
)
.union(
cls.get_optimade_field(field["name"])
for field in CONFIG.provider_fields.get(cls.ENDPOINT, ())
if isinstance(field, dict)
)
.union({cls.get_optimade_field(field) for field in cls.PROVIDER_FIELDS})
)
@classproperty
def ENTRY_RESOURCE_ATTRIBUTES(cls) -> dict[str, Any]:
"""Returns the dictionary of attributes defined by the underlying entry resource class."""
from optimade.server.schemas import retrieve_queryable_properties
return retrieve_queryable_properties(cls.ENTRY_RESOURCE_CLASS.schema())
@classproperty
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def ENDPOINT(cls) -> str:
"""Returns the expected endpoint for this mapper, corresponding
to the `type` property of the resource class.
"""
return (
cls.ENTRY_RESOURCE_CLASS.schema()
.get("properties", {})
.get("type", {})
.get("default", "")
)
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_length_aliases(cls) -> tuple[tuple[str, str], ...]:
"""Returns all of the associated length aliases for this class,
including those defined by the server config.
Returns:
A tuple of length alias tuples.
"""
from optimade.server.config import CONFIG
return cls.LENGTH_ALIASES + tuple(
CONFIG.length_aliases.get(cls.ENDPOINT, {}).items()
)
@classmethod
@lru_cache(maxsize=128)
def length_alias_for(cls, field: str) -> Optional[str]:
"""Returns the length alias for the particular field,
or `None` if no such alias is found.
Parameters:
field: OPTIMADE field name.
Returns:
Aliased field as found in [`all_length_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_length_aliases].
"""
return dict(cls.all_length_aliases()).get(field, None)
@classmethod
@lru_cache(maxsize=128)
def get_backend_field(cls, optimade_field: str) -> str:
"""Return the field name configured for the particular
underlying database for the passed OPTIMADE field name, that would
be used in an API filter.
Aliases are read from
[`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
If a dot-separated OPTIMADE field is provided, e.g., `species.mass`, only the first part will be mapped.
This means for an (OPTIMADE, DB) alias of (`species`, `kinds`), `get_backend_fields("species.mass")`
will return `kinds.mass`.
Arguments:
optimade_field: The OPTIMADE field to attempt to map to the backend-specific field.
Examples:
>>> get_backend_field("chemical_formula_anonymous")
'formula_anon'
>>> get_backend_field("formula_anon")
'formula_anon'
>>> get_backend_field("_exmpl_custom_provider_field")
'custom_provider_field'
Returns:
The mapped field name to be used in the query to the backend.
"""
split = optimade_field.split(".")
alias = dict(cls.all_aliases()).get(split[0], None)
if alias is not None:
return alias + ("." + ".".join(split[1:]) if len(split) > 1 else "")
return optimade_field
@classmethod
@lru_cache(maxsize=128)
def alias_for(cls, field: str) -> str:
"""Return aliased field name.
!!! warning "Deprecated"
This method is deprecated could be removed without further warning. Please use
[`get_backend_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_backend_field].
Parameters:
field: OPTIMADE field name.
Returns:
Aliased field as found in [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
"""
warnings.warn(
"The `.alias_for(...)` method is deprecated, please use `.get_backend_field(...)`.",
DeprecationWarning,
)
return cls.get_backend_field(field)
@classmethod
@lru_cache(maxsize=128)
def get_optimade_field(cls, backend_field: str) -> str:
"""Return the corresponding OPTIMADE field name for the underlying database field,
ready to be used to construct the OPTIMADE-compliant JSON response.
Aliases are read from
[`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
Arguments:
backend_field: The backend field to attempt to map to an OPTIMADE field.
Examples:
>>> get_optimade_field("chemical_formula_anonymous")
'chemical_formula_anonymous'
>>> get_optimade_field("formula_anon")
'chemical_formula_anonymous'
>>> get_optimade_field("custom_provider_field")
'_exmpl_custom_provider_field'
Returns:
The mapped field name to be used in an OPTIMADE-compliant response.
"""
return {alias: real for real, alias in cls.all_aliases()}.get(
backend_field, backend_field
)
@classmethod
@lru_cache(maxsize=128)
def alias_of(cls, field: str) -> str:
"""Return de-aliased field name, if it exists,
otherwise return the input field name.
!!! warning "Deprecated"
This method is deprecated could be removed without further warning. Please use
[`get_optimade_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_optimade_field].
Parameters:
field: Field name to be de-aliased.
Returns:
De-aliased field name, falling back to returning `field`.
"""
warnings.warn(
"The `.alias_of(...)` method is deprecated, please use `.get_optimade_field(...)`.",
DeprecationWarning,
)
return cls.get_optimade_field(field)
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def get_required_fields(cls) -> set:
"""Get REQUIRED response fields.
Returns:
REQUIRED response fields.
"""
return cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS
@classmethod
def map_back(cls, doc: dict) -> dict:
"""Map properties from MongoDB to OPTIMADE.
Starting from a MongoDB document `doc`, map the DB fields to the corresponding OPTIMADE fields.
Then, the fields are all added to the top-level field "attributes",
with the exception of other top-level fields, defined in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS`.
All fields not in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS` + "attributes" will be removed.
Finally, the `type` is given the value of the specified `cls.ENDPOINT`.
Parameters:
doc: A resource object in MongoDB format.
Returns:
A resource object in OPTIMADE format.
"""
mapping = ((real, alias) for alias, real in cls.all_aliases())
newdoc = {}
reals = {real for alias, real in cls.all_aliases()}
for key in doc:
if key not in reals:
newdoc[key] = doc[key]
for real, alias in mapping:
if real in doc:
newdoc[alias] = doc[real]
if "attributes" in newdoc:
raise Exception("Will overwrite doc field!")
attributes = newdoc.copy()
for field in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
value = attributes.pop(field, None)
if value is not None:
newdoc[field] = value
for field in list(newdoc.keys()):
if field not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
del newdoc[field]
newdoc["type"] = cls.ENDPOINT
newdoc["attributes"] = attributes
return newdoc
@classmethod
def deserialize(
cls, results: Union[dict, Iterable[dict]]
) -> Union[list[EntryResource], EntryResource]:
"""Converts the raw database entries for this class into serialized models,
mapping the data along the way.
"""
if isinstance(results, dict):
return cls.ENTRY_RESOURCE_CLASS(**cls.map_back(results))
return [cls.ENTRY_RESOURCE_CLASS(**cls.map_back(doc)) for doc in results]
ENTRY_RESOURCE_CLASS (Resource)
pydantic-model
¶
The base model for an entry resource.
Source code in optimade/server/mappers/entries.py
class EntryResource(Resource):
"""The base model for an entry resource."""
id: str = OptimadeField(
...,
description="""An entry's ID as defined in section Definition of Terms.
- **Type**: string.
- **Requirements/Conventions**:
- **Support**: MUST be supported by all implementations, MUST NOT be `null`.
- **Query**: MUST be a queryable property with support for all mandatory filter features.
- **Response**: REQUIRED in the response.
- **Examples**:
- `"db/1234567"`
- `"cod/2000000"`
- `"cod/2000000@1234567"`
- `"nomad/L1234567890"`
- `"42"`""",
support=SupportLevel.MUST,
queryable=SupportLevel.MUST,
)
type: str = OptimadeField(
description="""The name of the type of an entry.
- **Type**: string.
- **Requirements/Conventions**:
- **Support**: MUST be supported by all implementations, MUST NOT be `null`.
- **Query**: MUST be a queryable property with support for all mandatory filter features.
- **Response**: REQUIRED in the response.
- MUST be an existing entry type.
- The entry of type `<type>` and ID `<id>` MUST be returned in response to a request for `/<type>/<id>` under the versioned base URL.
- **Example**: `"structures"`""",
support=SupportLevel.MUST,
queryable=SupportLevel.MUST,
)
attributes: EntryResourceAttributes = StrictField(
...,
description="""A dictionary, containing key-value pairs representing the entry's properties, except for `type` and `id`.
Database-provider-specific properties need to include the database-provider-specific prefix (see section on Database-Provider-Specific Namespace Prefixes).""",
)
relationships: Optional[EntryRelationships] = StrictField(
None,
description="""A dictionary containing references to other entries according to the description in section Relationships encoded as [JSON API Relationships](https://jsonapi.org/format/1.0/#document-resource-object-relationships).
The OPTIONAL human-readable description of the relationship MAY be provided in the `description` field inside the `meta` dictionary of the JSON API resource identifier object.""",
)
alias_for(cls, field)
classmethod
¶
Return aliased field name.
Deprecated
This method is deprecated could be removed without further warning. Please use
get_backend_field()
.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
field |
str |
OPTIMADE field name. |
required |
Returns:
Type | Description |
---|---|
str |
Aliased field as found in |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=128)
def alias_for(cls, field: str) -> str:
"""Return aliased field name.
!!! warning "Deprecated"
This method is deprecated could be removed without further warning. Please use
[`get_backend_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_backend_field].
Parameters:
field: OPTIMADE field name.
Returns:
Aliased field as found in [`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
"""
warnings.warn(
"The `.alias_for(...)` method is deprecated, please use `.get_backend_field(...)`.",
DeprecationWarning,
)
return cls.get_backend_field(field)
alias_of(cls, field)
classmethod
¶
Return de-aliased field name, if it exists, otherwise return the input field name.
Deprecated
This method is deprecated could be removed without further warning. Please use
get_optimade_field()
.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
field |
str |
Field name to be de-aliased. |
required |
Returns:
Type | Description |
---|---|
str |
De-aliased field name, falling back to returning |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=128)
def alias_of(cls, field: str) -> str:
"""Return de-aliased field name, if it exists,
otherwise return the input field name.
!!! warning "Deprecated"
This method is deprecated could be removed without further warning. Please use
[`get_optimade_field()`][optimade.server.mappers.entries.BaseResourceMapper.get_optimade_field].
Parameters:
field: Field name to be de-aliased.
Returns:
De-aliased field name, falling back to returning `field`.
"""
warnings.warn(
"The `.alias_of(...)` method is deprecated, please use `.get_optimade_field(...)`.",
DeprecationWarning,
)
return cls.get_optimade_field(field)
all_aliases(cls)
classmethod
¶
Returns all of the associated aliases for this entry type, including those defined by the server config. The first member of each tuple is the OPTIMADE-compliant field name, the second is the backend-specific field name.
Returns:
Type | Description |
---|---|
Iterable |
A tuple of alias tuples. |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_aliases(cls) -> Iterable[tuple[str, str]]:
"""Returns all of the associated aliases for this entry type,
including those defined by the server config. The first member
of each tuple is the OPTIMADE-compliant field name, the second
is the backend-specific field name.
Returns:
A tuple of alias tuples.
"""
from optimade.server.config import CONFIG
return (
tuple(
(f"_{CONFIG.provider.prefix}_{field}", field)
if not field.startswith("_")
else (field, field)
for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
if isinstance(field, str)
)
+ tuple(
(f"_{CONFIG.provider.prefix}_{field['name']}", field["name"])
if not field["name"].startswith("_")
else (field["name"], field["name"])
for field in CONFIG.provider_fields.get(cls.ENDPOINT, [])
if isinstance(field, dict)
)
+ tuple(
(f"_{CONFIG.provider.prefix}_{field}", field)
if not field.startswith("_")
else (field, field)
for field in cls.PROVIDER_FIELDS
)
+ tuple(CONFIG.aliases.get(cls.ENDPOINT, {}).items())
+ cls.ALIASES
)
all_length_aliases(cls)
classmethod
¶
Returns all of the associated length aliases for this class, including those defined by the server config.
Returns:
Type | Description |
---|---|
tuple |
A tuple of length alias tuples. |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def all_length_aliases(cls) -> tuple[tuple[str, str], ...]:
"""Returns all of the associated length aliases for this class,
including those defined by the server config.
Returns:
A tuple of length alias tuples.
"""
from optimade.server.config import CONFIG
return cls.LENGTH_ALIASES + tuple(
CONFIG.length_aliases.get(cls.ENDPOINT, {}).items()
)
deserialize(results)
classmethod
¶
Converts the raw database entries for this class into serialized models, mapping the data along the way.
Source code in optimade/server/mappers/entries.py
@classmethod
def deserialize(
cls, results: Union[dict, Iterable[dict]]
) -> Union[list[EntryResource], EntryResource]:
"""Converts the raw database entries for this class into serialized models,
mapping the data along the way.
"""
if isinstance(results, dict):
return cls.ENTRY_RESOURCE_CLASS(**cls.map_back(results))
return [cls.ENTRY_RESOURCE_CLASS(**cls.map_back(doc)) for doc in results]
get_backend_field(cls, optimade_field)
classmethod
¶
Return the field name configured for the particular underlying database for the passed OPTIMADE field name, that would be used in an API filter.
Aliases are read from
all_aliases()
.
If a dot-separated OPTIMADE field is provided, e.g., species.mass
, only the first part will be mapped.
This means for an (OPTIMADE, DB) alias of (species
, kinds
), get_backend_fields("species.mass")
will return kinds.mass
.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
optimade_field |
str |
The OPTIMADE field to attempt to map to the backend-specific field. |
required |
Examples:
>>> get_backend_field("chemical_formula_anonymous")
'formula_anon'
>>> get_backend_field("formula_anon")
'formula_anon'
>>> get_backend_field("_exmpl_custom_provider_field")
'custom_provider_field'
Returns:
Type | Description |
---|---|
str |
The mapped field name to be used in the query to the backend. |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=128)
def get_backend_field(cls, optimade_field: str) -> str:
"""Return the field name configured for the particular
underlying database for the passed OPTIMADE field name, that would
be used in an API filter.
Aliases are read from
[`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
If a dot-separated OPTIMADE field is provided, e.g., `species.mass`, only the first part will be mapped.
This means for an (OPTIMADE, DB) alias of (`species`, `kinds`), `get_backend_fields("species.mass")`
will return `kinds.mass`.
Arguments:
optimade_field: The OPTIMADE field to attempt to map to the backend-specific field.
Examples:
>>> get_backend_field("chemical_formula_anonymous")
'formula_anon'
>>> get_backend_field("formula_anon")
'formula_anon'
>>> get_backend_field("_exmpl_custom_provider_field")
'custom_provider_field'
Returns:
The mapped field name to be used in the query to the backend.
"""
split = optimade_field.split(".")
alias = dict(cls.all_aliases()).get(split[0], None)
if alias is not None:
return alias + ("." + ".".join(split[1:]) if len(split) > 1 else "")
return optimade_field
get_optimade_field(cls, backend_field)
classmethod
¶
Return the corresponding OPTIMADE field name for the underlying database field, ready to be used to construct the OPTIMADE-compliant JSON response.
Aliases are read from
all_aliases()
.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
backend_field |
str |
The backend field to attempt to map to an OPTIMADE field. |
required |
Examples:
>>> get_optimade_field("chemical_formula_anonymous")
'chemical_formula_anonymous'
>>> get_optimade_field("formula_anon")
'chemical_formula_anonymous'
>>> get_optimade_field("custom_provider_field")
'_exmpl_custom_provider_field'
Returns:
Type | Description |
---|---|
str |
The mapped field name to be used in an OPTIMADE-compliant response. |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=128)
def get_optimade_field(cls, backend_field: str) -> str:
"""Return the corresponding OPTIMADE field name for the underlying database field,
ready to be used to construct the OPTIMADE-compliant JSON response.
Aliases are read from
[`all_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_aliases].
Arguments:
backend_field: The backend field to attempt to map to an OPTIMADE field.
Examples:
>>> get_optimade_field("chemical_formula_anonymous")
'chemical_formula_anonymous'
>>> get_optimade_field("formula_anon")
'chemical_formula_anonymous'
>>> get_optimade_field("custom_provider_field")
'_exmpl_custom_provider_field'
Returns:
The mapped field name to be used in an OPTIMADE-compliant response.
"""
return {alias: real for real, alias in cls.all_aliases()}.get(
backend_field, backend_field
)
get_required_fields(cls)
classmethod
¶
Get REQUIRED response fields.
Returns:
Type | Description |
---|---|
set |
REQUIRED response fields. |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=NUM_ENTRY_TYPES)
def get_required_fields(cls) -> set:
"""Get REQUIRED response fields.
Returns:
REQUIRED response fields.
"""
return cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS
length_alias_for(cls, field)
classmethod
¶
Returns the length alias for the particular field,
or None
if no such alias is found.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
field |
str |
OPTIMADE field name. |
required |
Returns:
Type | Description |
---|---|
Optional[str] |
Aliased field as found in |
Source code in optimade/server/mappers/entries.py
@classmethod
@lru_cache(maxsize=128)
def length_alias_for(cls, field: str) -> Optional[str]:
"""Returns the length alias for the particular field,
or `None` if no such alias is found.
Parameters:
field: OPTIMADE field name.
Returns:
Aliased field as found in [`all_length_aliases()`][optimade.server.mappers.entries.BaseResourceMapper.all_length_aliases].
"""
return dict(cls.all_length_aliases()).get(field, None)
map_back(doc)
classmethod
¶
Map properties from MongoDB to OPTIMADE.
Starting from a MongoDB document doc
, map the DB fields to the corresponding OPTIMADE fields.
Then, the fields are all added to the top-level field "attributes",
with the exception of other top-level fields, defined in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS
.
All fields not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS
+ "attributes" will be removed.
Finally, the type
is given the value of the specified cls.ENDPOINT
.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
doc |
dict |
A resource object in MongoDB format. |
required |
Returns:
Type | Description |
---|---|
dict |
A resource object in OPTIMADE format. |
Source code in optimade/server/mappers/entries.py
@classmethod
def map_back(cls, doc: dict) -> dict:
"""Map properties from MongoDB to OPTIMADE.
Starting from a MongoDB document `doc`, map the DB fields to the corresponding OPTIMADE fields.
Then, the fields are all added to the top-level field "attributes",
with the exception of other top-level fields, defined in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS`.
All fields not in `cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS` + "attributes" will be removed.
Finally, the `type` is given the value of the specified `cls.ENDPOINT`.
Parameters:
doc: A resource object in MongoDB format.
Returns:
A resource object in OPTIMADE format.
"""
mapping = ((real, alias) for alias, real in cls.all_aliases())
newdoc = {}
reals = {real for alias, real in cls.all_aliases()}
for key in doc:
if key not in reals:
newdoc[key] = doc[key]
for real, alias in mapping:
if real in doc:
newdoc[alias] = doc[real]
if "attributes" in newdoc:
raise Exception("Will overwrite doc field!")
attributes = newdoc.copy()
for field in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
value = attributes.pop(field, None)
if value is not None:
newdoc[field] = value
for field in list(newdoc.keys()):
if field not in cls.TOP_LEVEL_NON_ATTRIBUTES_FIELDS:
del newdoc[field]
newdoc["type"] = cls.ENDPOINT
newdoc["attributes"] = attributes
return newdoc
classproperty (property)
¶
A simple extension of the property decorator that binds to types rather than instances.
Modelled on this StackOverflow answer with some tweaks to allow mkdocstrings to do its thing.
Source code in optimade/server/mappers/entries.py
class classproperty(property):
"""A simple extension of the property decorator that binds to types
rather than instances.
Modelled on this [StackOverflow answer](https://stackoverflow.com/a/5192374)
with some tweaks to allow mkdocstrings to do its thing.
"""
def __init__(self, func):
self.__name__ = func.__name__
self.__module__ = func.__module__
self.__doc__ = func.__doc__
self.__wrapped__ = func
def __get__(self, _, owner):
return self.__wrapped__(owner)